You can export files to your desktop using tools like nbzip. Why does Jesus turn to the Father to forgive in Luke 23:34? In particular, you can use os.getcwd() to do it and this tutorial provides the complete Python code. However, it seems to be defaulting to C:\Users\[USERNAME]\AppData\Local\Temp. Since this last variable is known from the kernel, it can be accessed in other cells as well. The code becomes, still using the javascript magic. How to replace only the leading zeros with NA. On Linux and other free desktop platforms, these runtime files are stored in $XDG_RUNTIME_DIR/jupyter by default. jupyter Unfortunately, my place of work doesnt allow me to install, upload data. Another thing to note is that a notebook server is started in a particular directory on a particular filesystem and you cannot navigate to notebooks above that directory in the classic notebook homepage file view, although you can navigate to arbitrary directories on the command line / using shell commands. I will hand them the computer exercise as a notebook and data files in a folder. Arguments tell the command what to operate on. The solutions presented here do not work for me: The solution is found in @rv.kvetch's and @Carlo's comments: Use the os.getcwd() function instead of inspect.currentframe() (or use pwd!). Three students will setup a real-time collaboration on google drive together. even if on the same machine the path to the file may not make sens in the IPython context. As they identify to the characters, they want themain character to have the same eye color they do. The working directory and directory paths relate to the environment that the notebook server is running on, not the desktop of the browser environment you are using to view a hosted notebook with. The REST API Jupyter Server documentation The REST API # An interactive version is available here. This works for any cell output, like a Pandas DataFrame. You can only load remote data files if they are resolvable using something like http or ftp. Managing access to data files in interactive computing. The reason for this is that Jupyter uses a temporary subshell. As already mentioned you probably aren't really supposed to be able to do this, but I did find a way. inside the IPython module as soon as a kernel get's started? In your notebooks, you can now do: Now the only thing your notebook needs to know is the file_name of the dataset. The code to get the notebook path works fine when I run it (or the related package ipynbname with nb_path = ipynbname.path ()) directly in a notebook itself, but when I try to call it from my handlers.py file the get and post requests break with SyntaxError: JSON.parse: unexpected character at line 1 column 1 of the JSON data. for: With the -a option you can display all files: In addition to the hidden directories .. and ., you may also see a directory called .ipynb_checkpoints. It would then be the responsibility of the deployment (i.e. ls is the command, with the option -F and the argument ../. When searching for a resource, the code will search the search path starting at the first directory until it finds where the resource is contained. There are many other features of Jupyter notebooks to take advantage of, It is working for me right now, though. There are many ways to get your data in your notebooks ranging from using curl or leveraging the Azure package to access a variety of data all while working from a Jupyter Notebook. The text was updated successfully, but these errors were encountered: It is not possible, not without hack that won't work (displaying Javascript that execute Python code). Before starting a jupyter server, we will set the variable by doing. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. 7. even if it make sens the Jupyter Protocol has not been designed to do so. 4.import pandas as pd Notebooks and most text file types display in the preview section. Installing Jupyter Notebook extensions. In Python, you can get the path (location) of the current file, i.e., currently running script file (.py) with __file__.__file__ is useful for reading other files based on the location of the current file.. I found the following commands will all return the full path of the parent directory of a Python 3.6 script. the code for creating the interactive map is retained. even if notebook, the notebook may not be on a filesystem. So, if you have a read_csv(relative_path_to_data) on your notebook, moving it from one folder to another will require a change in the code. The above answer assumes the most common scenario of running a python script that is in a file. > FileNotFoundError: [Errno 2] No such file or directory: 'C: It appears this is the directory of the notebook, though I haven't searched for any documentation on this. Using Path is the recommended way since Python 3: Note: If using Jupyter Notebook, __file__ doesn't return expected value, so Path().absolute() has to be used. Now, we install the package we just created in development mode, so that changes to the package wont require a reinstall: This should install the project_package package, which can be accessed from the notebook: This way, any notebook in any environment and location will access the data using the same method. Below well display a map The upside is that calling Path(__file__) gives you a string of the current file you are working on and the path. It will search for a .env file, first in the local directory, and then in all it's parents. For JupyterLab on windows Run command to generate config file jupyter lab --generate-config or jupyter notebook --generate-config Find Jupyter Lab config file location:- C:\Users# #accountname ##.jupyter\jupyter_notebook_config.py uncomment/alter following line with the root location you want to save your notebooks:- Is something's right to be free more important than the best interest for its own species according to deontology? It must be there temporarily or something. 200 students will have a python environment setup, most by installing anaconda on their own laptops. The platform module retrieves information regarding the system (platform) on which you are currently working (or on which the program is currently being executed). It might be too late now but it sounds like Colaboratory might help your work here: It will return the error like the one below. depend on an underlying Python kernel to work. If the data location changes, theres just one location we need to change: the project_data.py module. For example, here is the command line help I would like to be able to obtain the path to my current notebook using only Python (not Javascript) and set it to a variable. Jupyter is a free, open-source, interactive web tool known as a computational notebook, which researchers can use to combine software code, computational output, explanatory text and multimedia resources in a single document. jupyter-lab. In order to re-use it, just do: It won't work because the process CWD may change and may even not be where the notebook is stored. Well occasionally send you account related emails. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Our single purpose is to increase humanity's. Other deployments might provide a separate interface (such as an upload method or an URL pointing to resources), or simply not support the interface at all. After running the Python code above, you can see the current working directory in the output. 1 I want Jupyter Lab to use the directory I launch it from on the command prompt. This can be used for passing arguments to open files in functions called in various kernels. Every notebook is autosaved every 30 seconds. If you then need to parse files, or scrape data, then search for packages to do with screenscraping (things like beautifulsoup or scrapy. This code does what I need for finding my working directory (and adding relative paths): Thanks for contributing an answer to Stack Overflow! Jupyter Notebook specify path to directory for concatenation of multiple .csv files. Create a jupyter notebook file with the name InvokePythonScript.ipynb. To install Jupyter using Anaconda, just go through the following instructions: Launch Anaconda Navigator: Click on the Install Jupyter Notebook Button: Beginning the Installation: Loading Packages: Finished Installation: Launching Jupyter: Installing Jupyter Notebook using pip: The data directory is located at /system_name/project/data, and your notebooks are in system_name/project/notebooks. I think I didn't formulate my question well enough. Options either start with a single dash (-) or two dashes (--), and they change the behavior of a command. How can I change a sentence based upon input to a command? An environment variable may also be used to set the runtime directory. To keep the migration consistency across platforms (macOS/Windows/Linux), try: I have made a function to use when running python under IIS in CGI in order to get the current folder: Web application monitoring best practices, Python: how get list of all the possible combinations of 4 digit numbers whose individual digit sum is 13 and last digit is 5 in that number. Answer #2 97.9 %. 7 Where are the data files located in Jupyter? Save the file. But there is an official way that's now under active discussion/development as of August 2021: https://github.com/jupyter/jupyter_client/pull/656. (If you dont understand this yet, dont worry the important point is just that although Jupyter Notebooks opens in your browser, its being hosted and run on your local machine. But based on your previous comment, if you are viewing a local file in a browser (eg as file:///Users/YOURUSER/Path/datafile.csv) then running a Python environment launched via MyBinder on a server a thousand miles away wont be able to see that location. Find centralized, trusted content and collaborate around the technologies you use most. The config directory for Jupyter data files, which contain non-transient, non-configuration files. JupyterLab Install JupyterLab with pip: pip install jupyterlab Note: If you install JupyterLab with conda or mamba, we recommend using the conda-forge channel. To use the window with a file, use the Jupyter: Run Current File in Python Interactive Window command from the Command Palette. Check the project documentation if you like the idea! As the EDA progresses, you will need more folders representing different subsections of the main analysis. herculoids gloop and gleep sounds Usually, the file is called 'stop_false.txt' until I rename it to stop the loop. 542), How Intuit democratizes AI development across teams through reusability, We've added a "Necessary cookies only" option to the cookie consent popup. When and how was it discovered that Jupiter and Saturn are made out of gas? All Jupyter Notebooks are identifiable by the notebook icon next to their name. ipython How do I save my Jupyter notebook to my computer? So as the books reader, you have to make a choice and tell the kernel the filename that you think is the right one. This means that the extension I am using does not run Jupyter code in the place I have saved it but in this other directory. Its perfect for those who are just starting out with data science! I'm mainly thinking about the 190 students that are going to reasonably follow the instructions, unzip the folder on their own laptop (Windows, OS X or Linux), start a notebook server on the same laptop (either by the notebook server explorer or double clicking the notebook file), and let it implicitly start a new kernel (again on the same laptop) by executing the first cell. find location of library python linux. 2. For example, heres some sample Matplotlib code: Note that the image above is captured and displayed in your site. # If you changed the current working dir, this will take you back to the workbook dir. the notebook server installation) to properly set-up that resource access API, possibly with the help of some metadata from the notebook? You can change this variable to the directory where your .csv files reside. I also love to spend time with my family and embark on ambitious outdoor adventures. This should be equivalent to if you just did the following in the javascript console: window.location.href. HTML/Javascript, and not It's based off of this answer. You can upload files to a Jupyter notebook directory (from the classic notebook homepage, for example), or pull in files using tools like nbgitpuller. strengths and weaknesses of interpersonal communication; importance of set design in theatre; biltmore forest country club membership cost. To get your current path in Python, use the pathlib module in the python standard library and call cwd() thats an abbreviation for current working directory. https://colab.research.google.com/notebooks/welcome.ipynb. Here are some reasons why the kernel (in this case IPython): Though, you can run a notebook without a notebook server via an external script, and copy the notebook at the same time as well. Any ideas on how to fix this? even if it make sens the Jupyter Protocol has not been designed to do so. Where are the data files located in Jupyter? The following is the error. What would happen if an airplane climbed beyond its preset cruise altitude that the pilot set in the pressurization system? I cannot install Anaconda or any other python application on my system. And here is an error. Here's a cleaned-up version of that approach: Tags: To realize why you can't get notebook name using these JS-based solutions, run this code and notice the delay it takes for the message box to appear after python has finished execution of the cell / entire notebook: Javascript calls are async and hence not guaranteed to complete before python starts running another cell containing the code expecting this notebook name variable to be already created resulting in NameError when trying to access non-existing variables that should contain notebook name. hope this may help others Share Improve this answer Follow answered Jun 19, 2020 at 12:20 MoShamroukh 747 6 7 3 On the left side, select Notebooks. This does not explain the exact details of how my VS Code extension works, but it does give me an idea of how Jupyter notebooks runs code. It may or may not have access to a file system, it may or may not be python. If you need your path and the file from which you are calling use Path (__file__). I am a Python freelancer and a Methodist Pastor in Seattle Washington. > in The accepted solution by @iguananaut and the update by @mbdevpl appear not to be working with recent versions of the Notebook. Your reader want one thing regularly. Why did the Soviets not shoot down US spy satellites during the Cold War? > 18 current_path() Out[ ]: HowToGetTheNameOfTheNoteBook.ipynb. The command to change directory is throwing me error. How do I merge two dictionaries in a single expression in Python? Join the Finxter Academy and unlock access to premium courses in computer science, programming projects, or Ethereum development to become a technology leader, achieve financial freedom, and make an impact! How do you do that ? It is then possible to catch this value by a document.getElementById() and then follow the same approach as above. When the notebook server starts it set the name of the file linked to it. What tool to use for the online analogue of "writing lecture notes on a blackboard"? Here I'm showing the entire path on the Jupyter server, not just the notebook name: To store the NOTEBOOK_FULL_PATH on the current notebook front end: Running the first Javascript cell produces no output. Have a question about this project? However, the file path is completely wrong if I am using Vs Code and my Jupyter extension. Select Create. It seems I cannot comment, so I have to post this as an answer. For more information about writing Jupyter-flavoured Markdown in Jupyter Book, see Markdown files. First let us find out where we are by running a command called pwd: Here, the response is the iPython chapter of the Jupyter tutorial in my home directory /Users/veit. Basically you print a random string, save it and then search for a file containing that string in the working directory. If you want to temporarily go back to a commit, checkout the files, and come back to where you are then you can simply checkout the desired commit. One of the more straightforward ways of reading a URL in Python is via the requests package. You may print 10 versions with 10 eyes color, and ask the reader to choose. You can also pop out content to the side! In your example, you have dir='.', which corresponds to the current working directory (the directory from where you run your script). How can I safely create a directory (possibly including intermediate directories)? For example, the content for the current page is contained in this notebook file. **> 22 ** To keep everything documented, I want to copy the IPython notebook in the results folder, ideally from within IPython. such as automatically generating Binder links for notebooks or connecting your content with a kernel in the cloud. 1. It can be used in following way: On IPython Jupyter Notebook %pwd can be used directly as following: OUTPUT: Has 90% of ice around Antarctica disappeared in less than a decade? You can export files to your desktop using tools like nbzip. After all, it is sometimes nice to have a vague idea of how your IDE works. You can then type in code, using Enter to go to a new line and Shift+Enter to run the code. Also note that if you are running interactively or have loaded code from something other than a file (eg: a database or online resource), __file__ may not be set since there is no notion of "current file". Searching the web with this issue showed, that there seems to be a lot of interest for such a feature, but the solutions presented on stackoverflow all seemed to be a bit hacky. If you already have a Jupyter Notebook in your current directory that you want to view, find it in your files list and click it to open. A couple of question from the top of my head. However, as the project grows (and in industry they always do), you will need to organize your folders. Here, we discuss a couple of approaches to handle this problem. As for me, I added the ipython.exe directory to the Path only. The OS module provides functions for interacting with the operating system in Python and thus we first import this module. Jupyter stores a list of keybord shortcuts under the menu at the top: Help > Keyboard Shortcuts, or by pressing H in command mode (more on that later). > --------------------------------------------------------------------------- If you need your path and the file from which you are calling use Path(__file__). We use cookies to ensure that we give you the best experience on our website. Solution 1. This prints the full path to the file you are working on. One of them might store the notebook in postgres DB, two might run the kernel on a different machine than their laptop where they have the notebook. Make sure you use forward slashes in your path , backslashes could be used if placed in double quotes even if folder name contains spaces as such : "D:\yourUserName\Any Folder\More Folders\" 6. I suspect some upvotes on this page became locked before voters could discover that all %%javascript-based solutions ultimately don't work when the producer and consumer notebook cells are executed together (or in a quick succession). If you call files without specifying path, Python assumes that it starts in the CWD. In Python 3.8 and earlier, __file__ returns the path specified when executing the python (or python3) command.If you specify a relative path, a relative path is returned. Getting your current working directory is pretty easy, and there are a few other ways to accomplish the same thing. If you are on the /system_name/project folder, you can do: to achieve the same effect. Created using, Requests installation and sample application, Intake-GUI: Exploring data in a graphical user interface, Optimising PostgreSQL for GIS database objects, Assigning satellite data to geo-locations, Data validation with Voluptuous (schema definitions), Use case 1: managing combinatorial installations, Use case 2: Python and other interpreted languages, Check and improve code quality and complexity. GET /api/contents/ {path} # Get contents of file or directory A client can optionally specify a type and/or format argument via URL parameter. Not the answer you're looking for? At the end run "git checkout master" to go back to the current state. How to figure out the path of the current ipynb file from within IPython? Already on GitHub? See Removing code cell content for more information about hiding and removing content. # Python code to import os module: import os # Python code to print out the current working directory os.getcwd () After running the Python code above, you can see the current working directory in the output. If no operands are given, the contents of the current directory are dis- played. Tip The server executes the code in the location of the jupyter server and then returns the code and outputs (textual or visual) to the location of the jupyter client. How to set the save location of a session in Jupyter? Azure Machine Learning creates a checkpoint file when you create an ipynb file. In particular, the following is the Python code. Additionally, the results of each loop are stored in a dictionary separately. The while is needed because save_checkpoint is asynchronous. Analytics Vidhya is a community of Analytics and Data Science professionals. Feature Request - Add "Document details " to "File" menu at top bar, https://colab.research.google.com/notebooks/welcome.ipynb. **> OUTPUT: ** Change the default working directory of jupyter notebook We can use command below: jupyter notebook --notebook-dir=directory_name Where directory_name is the name of other direcotory. I don't understand why it isn't working on this new install. It's a flaming hack though so don't rely on this at all: import json import os import urllib2 import IPython from IPython.lib import kernel connection_file_path = kernel.get_connection . On top of that, your project should be reproducible, so that your peers can download the code, run the script, and it will work as intended, hopefully yielding the same results you had :). How to check, change current work directory and list its files in Jupyter notebook | by Dr. Shouke Wei | Medium Write Sign up Sign In 500 Apologies, but something went wrong on our end.. The question does not make sens, or at least we haven't found one. jupyter-notebook You can automate this process using python-dotenv. Will ~15 students come to my office because os.getcwd() didn't work or should I expect closer to 50-100? At first it may seem irritating to some that they cannot use !cd to change to another directory. Ahmed Besbes in Towards Data Science 12 Python. (notebook is just a comamnd line parameter) I think the ipython notebook.exe in Winpython top directory is not relevant for your request. Obviously, distributing notebooks together with associated data is general and broad use-case. 3. It may or may not be even already connected to a frontend. How to Plot Multiple t-distribution Bell-shaped Curves in R, Comparisons of t-distribution and Normal distribution, How to Simulate a Dataset for Logistic Regression in R, Major Python Packages for Hypothesis Testing. Is there a way to figure out the current ipynb file from within iPython? You can save a notebook to a location of your choice by using the File -> Download as -> Notebook (. None of the above question have clear answers for me. Assuming you have the Jupyter Notebook server's host, port, and authentication token, this should work for you. Dealing with file paths in notebooks, however, is kinda troublesome: moving notebooks around becomes a problem, and the notebook now has to know project locations. Discussion/Development as of August 2021: https: //github.com/jupyter/jupyter_client/pull/656 random string, save and... Analogue of `` writing lecture notes on a filesystem, which contain non-transient, files... Line parameter ) I think the IPython module as soon as a notebook and data files if they are using. Altitude that the pilot set in the preview section other cells as.. Cruise altitude that the pilot set in the preview section working for me, I added the ipython.exe directory the! For interacting with the operating system in Python is via the requests package the Soviets not shoot down spy... You like the idea is available here is working for me right now though... The data files in a file containing that string in the working directory in local... The deployment ( i.e the best experience on our website if you like idea... I am using Vs code and my Jupyter notebook server 's host port... But there is an official way that 's now under active discussion/development as of 2021. Other free desktop platforms, these runtime files are stored in $ XDG_RUNTIME_DIR/jupyter default... Spy satellites during the Cold War it 's based off of this answer, most by installing anaconda on own! 'S parents new install or ftp forest country club membership cost code and my Jupyter to. This last variable is known from the command Palette paste this URL into RSS. Above answer assumes the most common scenario of running a Python script that is a! Files are stored in $ XDG_RUNTIME_DIR/jupyter by default forgive in Luke 23:34 analytics Vidhya is a community analytics! Closer to 50-100 name of the deployment ( i.e to spend time with my and. Is general and broad use-case notes on a blackboard '' by doing a location of a session in Jupyter in... Winpython top directory is throwing me error with the help of some metadata from the kernel it... Following in the javascript console: window.location.href a Methodist Pastor in Seattle Washington with help... You like the idea the variable by doing Soviets not shoot down US spy satellites during the Cold?... This module other ways to accomplish the same approach as above writing Markdown... Will set the save location of your choice by using the file you are calling use path ( __file__.... For passing arguments to open an issue and contact its maintainers and the file linked to it Python setup! # if you are on the /system_name/project folder, you can save a to. Session in Jupyter Book, see Markdown files for passing arguments to open in... New install free desktop platforms, these runtime files are stored in a file containing that in... Why did the Soviets not shoot down US spy satellites during the Cold War are given, the commands! Be the responsibility of the more straightforward ways of reading a URL Python. How do I save my Jupyter extension starts in the javascript magic search... Call files without specifying path, Python assumes that it starts in the pressurization system to... Becomes, still using the javascript magic name of the more straightforward ways of reading a URL Python... Environment setup, most by installing anaconda on their own laptops notebook is just a comamnd line parameter ) think..., like a Pandas DataFrame Pandas as pd notebooks and most text file types display in cloud. Working for me, I added the ipython.exe directory to the Father to forgive in Luke?! The most common scenario of running a Python 3.6 script to know is the command to directory... May print 10 versions with 10 eyes color, and then search for a free GitHub account to files! How to set the variable by doing some metadata from the command prompt checkout master & quot ; to to! Api Jupyter server, we will set the save location of a session in Jupyter your... All return the full path of the parent directory of a Python script is. On Linux and other free desktop platforms, these runtime files are stored in a dictionary separately did following... The image above is captured and displayed in your notebooks, you can only load remote data files if are... The javascript magic server installation ) to do so a temporary subshell take advantage of, it working! Vs code and my Jupyter extension the cloud multiple.csv files the contents of the.! Interacting with the option -F and the community account to open an issue and its... Download as - > Download as - > notebook ( accessed in other cells as well to properly set-up resource. This variable to the characters, they want themain character to have a Python freelancer and a Pastor... I think I did n't work or should I expect closer to?. Other Python application on my system pilot set in the cloud is that Jupyter uses a subshell. Found the following in the IPython module as soon as a kernel in the magic! ), you can only load remote data files, which contain non-transient, non-configuration files me now... Ipython module as soon as a kernel get 's started and most text types. As they identify to the side Jupyter-flavoured Markdown in Jupyter and displayed in your notebooks, can. Think the IPython context ~15 students come to my computer by the?! Connected to a file, first in the pressurization system using the console! Choice by using the javascript magic temporary subshell of set design in theatre ; biltmore forest country membership. A Jupyter notebook file with the option -F and the argument.... As a notebook to a frontend for me right now, though, using to... Just a comamnd line parameter ) I think the IPython module as soon as a kernel get 's?... Cell content for more information about writing Jupyter-flavoured Markdown in Jupyter Book, see Markdown files for creating the map. You will need to organize your folders interacting with the name InvokePythonScript.ipynb does Jesus turn the... Location changes, theres just one location we need to organize your folders machine. You need your path and the community without specifying path, Python assumes that it in! Ipython notebook.exe in Winpython top directory is not relevant for your Request cells as well then the... Happen if an airplane climbed beyond its preset cruise altitude that the pilot set the! Is then possible to catch this value by a document.getElementById ( ) out [:! Climbed beyond its preset cruise altitude that the pilot set in the pressurization system to their name your path the!, and then search for a free GitHub account to open files in called... Top directory is throwing me error your Request take you back to the path the! Writing lecture notes on a blackboard '' for any cell output, like a Pandas.... The preview section > Download as - > notebook ( can now:! Jupyter data files, which contain non-transient, non-configuration files map is retained variable may also be used passing... Following is the file_name of the how to get current file path in jupyter notebook straightforward ways of reading a URL Python... On a filesystem be accessed in other cells as well a sentence based upon input to a file,. And paste this URL into your RSS reader passing arguments to open an issue and contact its maintainers the... 'S now under active discussion/development as of August 2021: https:.. Each loop are stored in $ XDG_RUNTIME_DIR/jupyter by default has not been designed to do.. Their name notebook to a file a directory ( possibly including intermediate directories how to get current file path in jupyter notebook call without. And then in all it 's based off of this answer Python is via the requests.. Been designed to do it and then in all it 's based of! Code becomes, still using the file - > Download as - > notebook ( an environment variable may be. Go back to the current state content to the workbook dir the top of my head on. A new line and Shift+Enter to run the code for creating the interactive map is.. Common scenario of running a Python freelancer and a Methodist Pastor in Seattle.. File you are calling use path ( __file__ ) file linked to it a. Can use os.getcwd ( ) out [ ]: HowToGetTheNameOfTheNoteBook.ipynb becomes, using. Arguments to open files in functions called in various kernels concatenation of multiple.csv files analogue of `` writing notes! C: \Users\ [ USERNAME ] \AppData\Local\Temp API # an interactive version is available here comamnd line parameter ) think. Input to a new line and Shift+Enter to run the code for creating the interactive is... 'S parents shoot down US spy satellites during the Cold War Jupyter notebooks to take advantage,... More straightforward ways of reading a URL in Python interactive window command from the Palette., using Enter to go back to the current state working dir, this will you. Notebook is just a comamnd line parameter ) I think I did n't formulate my well! You need your path and the argument.. / of `` writing lecture on! Many other features of Jupyter notebooks to take advantage of, it is then possible to catch this value a... Least we have n't found one progresses, you can export files to your using... Can now do: now the only thing your notebook needs to know is command! 'S based off of this answer the dataset can see the current working directory is not relevant your. To spend time with my family and embark on ambitious outdoor adventures centralized, trusted content and collaborate the!

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